numsteps 15000 firststep 0 temperature 0.0 cellsize 6.5 boundaryConditions Normal cellManager Cubic exclude none posfile 3mg7ca.pos.xyz #velfile 3mg7ca.vel.xyz psffile 3mg7ca.psf parfile 3mg7ca.par outputfreq 10 FINXYZPOSFILE 3mg7ca.out.fin.pos.xyz #finXYZVELFILE 3mg7ca.out.fin.vel.xyz #DCDFILE 3mg7ca.out.trajectory.pos.dcd ALLENERGIESFILE 3mg7ca.out.energies #XYZFORCESFILE 3mg7ca.out.forces BSDLOUTPUTFREQ 1000 BSDLFILE 3mg7ca.out #doshowbsdlwater no RESTARTFILE 3mg7ca.out.restart restartfreq 5000 usecharmm28parfile no seed 1234 Integrator { level 0 Leapfrog { timestep 1.0 force Coulomb -algorithm NonbondedSimpleFull force PaulTrap -omegaR 0.01 -omegaZ 0.01 force Friction -k -50.0 } }